Publications by Biophoenix' Principals

Molecular Diagnostics: Effective Tools for Disease Management (3rd Ed)
Publisher:D&MD Publications Inc
Year of publication:2006
Type of publication:Management report
Publisher's reference (if any):N/A
Author(s):Sreten Bogdanovic and Beata Langlands
Approximate page count:400
Price when published:$5,275
Remarks:
  1. Page numbers, where given, refer to the draft manuscript (which may differ from the published version).
  2. The copyright in this report is owned by the publisher, to whom any requests for copies should be addressed.
  3. The price shown is for a single copy of the print version. Multiple copies and electronic copies usually have different prices.
                              MOLECULAR DIAGNOSTICS
                     Effective Tools for Disease Management
                               (3rd Edition, 2006)

                                TABLE OF CONTENTS

         EXECUTIVE SUMMARY

         CHAPTER 1 INTRODUCTION

           1.1 Molecular diagnostics
           1.2 The IVD industry and molecular diagnostics
           1.3 Uses of molecular diagnostics in clinical settings
           1.4 Regulation of molecular diagnostics
              1.4.1 FDA's new pharmacogenomic guidelines
           1.5 Scope of this Report

         CHAPTER 2 TECHNOLOGY DEVELOPMENTS

           2.1 Overview of technology platforms
           2.2 Immunoassay technology
              2.2.1 Introduction
              2.2.2 Immunoassay formats
                2.2.2.1 Basic assay designs
                2.2.2.2 Automation and miniaturization
                2.2.2.3 Rapid immunochromatographic assays
           2.3 Proteomics technology
              2.3.1 Introduction
              2.3.2 Mass spectrometry
              2.3.3 Protein arrays
              2.3.4 SELDI ProteinChip technology
           2.4 Nucleic acid testing technology
              2.4.1 Introduction
                2.4.1.1 Isolation of nucleic acids
              2.4.2 DNA sequencing
              2.4.3 Probe-based NAT
                2.4.3.1 PCR-based amplification technologies
                2.4.3.2 Alternative amplification technologies
                2.4.3.3 Automation
                2.4.3.5 DNA microarrays
           2.5 Gene activity analysis
              2.5.1 Transcriptional profiling
              2.5.2 Methylation analysis

         CHAPTER 3 MOLECULAR DIAGNOSTICS IN INFECTIOUS DISEASES

           3.1 Introduction
              3.1.1 Role of molecular diagnostics
           3.2 Viral infections
              3.2.1 HIV
              3.2.2 Hepatitis viruses
              3.2.3 Influenza and RSV
              3.2.4 SARS
              3.2.5 WNV
              3.2.6 HPV
           3.3 Bacterial infections
              3.3.1 Chlamydia and gonorrhea
              3.3.2 Mycobacteria
              3.3.3 MRSA
              3.3.4 Anthrax
              3.3.5 Sepsis screening
           3.4 Fungal and parasitic infections
           3.5 Screening of blood and blood products

         CHAPTER 4 CARDIOVASCULAR DISEASES

           4.1 Overview of cardiovascular diseases
              4.1.1 Role of molecular diagnostics
           4.2 Biochemical risk factors for coronary disease
              4.2.1 Lipoprotein-related markers
              4.2.2 CRP
              4.2.3 Lp-PLA2
              4.2.4 Homocysteine
              4.2.5 MPO
              4.2.6 Other markers
           4.3 Acute chest pain
              4.3.1 Markers of necrosis
              4.3.2 Markers of ischemia
           4.4 Heart failure
           4.5 Multi marker strategies in ACS
           4.6 Stroke
           4.7 Susceptibility to cardiovascular disease
              4.7.1 Monogenic cardiovascular diseases
              4.7.2 Non-monogenic diseases
           4.8 Prediction of drug efficacy

         CHAPTER 5 CANCER

           5.1 Overview of cancer
           5.2 Role of molecular diagnostics
              5.2.1 Protein analysis
              5.2.2 Gene expression analysis
              5.2.3 DNA analysis
           5.3 Breast cancer
              5.3.1 Diagnostic markers
              5.3.2 Prognostic markers
              5.3.3 Markers of disease susceptibility
              5.3.4 Markersofdrug response
           5.4 Prostate cancer
              5.4.1 Diagnostic markers
              5.4.2 Prognostic markers
              5.4.3 Markers of disease susceptibility
              5.4.4 Markers of drug response
           5.5 Colorectal cancer
              5.5.1 Diagnostic markers
              5.5.2 Prognostic markers
              5.5.3 Markers of disease susceptibility
              5.5.4 Markers of drug response
           5.6 Lung cancer
              5.6.1 Diagnostic markers
              5.6.2 Markers of drug response
           5.7 Ovarian cancer
              5.7.1 Diagnostic markers

         CHAPTER 6 MISCELLANEOUS DISEASES AND CONDITIONS

           6.1 Introduction
           6.2 Genetic disorders
              6.2.1 Chromosomal abnormalities
                6.2.1.1 Down Syndrome
              6.2.2 Monogenic diseases
                6.2.2.1 Cystic fibrosis
           6.3 Neurodegenerative/neuropsychiatric diseases
              6.3.1 Alzheimer's disease
              6.3.2 Other diseases
           6.4 Metabolic diseases
              6.4.1 Diabetes and its complications
              6.4.2 Osteoporosis
              6.4.3 Preeclampsia
           6.5 Other conditions
           6.6 Predictions of drug adverse effects
              6.6.1 Cytochrome P450 gene family

         CHAPTER 7 PATENTS FOR DIAGNOSTIC USE OF BIOMARKERS

           7.1  Introduction
           7.2  Overview of Patents
           7.3  Role of patents in the biomedical industry
           7.4  Patenting of genes and antibodies
           7.5  The molecular diagnostics patent data set
           7.6  Molecular diagnostics patent activities
           7.7  Forward citations
           7.8  Patent assignees

         CHAPTER 8 MARKET CONSIDERATIONS AND FORECASTS

           8.1  Introduction
           8.2  Overview of the total pharmaceuticals market
           8.3  Overview of the total in vitro diagnostics market
           8.4  Outlook for the total immunoassay market
             8.4.1  General Immunoassays
             8.4.2  Infectious Disease Immunoassays
             8.4.3  Cancer Immunoassays
             8.4.4  Specialty (e.g. Cardiovascular) Immunoassays
           8.5  Outlook for the total NAT market
             8.5.1 Infectious Diseases
               8.5.1.1  Bacterial tests
               8.5.1.2  Viral detection and load
               8.5.1.3  Viral and bacterial genotyping
               8.5.1.4  Blood screening
             8.5.2 Cancer
               8.5.2.1  Cervical cancer (HPV) screening
               8.5.2.2  Chromosomal abberations and shed nucleic
               8.5.2.3  Gene expression profiling
             8.5.3  Genetic testing and hereditary cancers
             8.5.4  Predisposition and pharmacogenomic tests
             8.5.5  Human Identity Testing
           8.6  Outlook for the proteomic assay market
           8.7  Forecasts by geographical region
           8.8  Leading companies and analytes

         CHAPTER 9 PROFILES OF SELECTED COMPANIES

         CHAPTER 10 TRENDS AND OPPORTUNITIES

          10.1 Next generation molecular diagnostics
          10.2 Exploiting protein biomarkers
          10.3 Exploiting gene expression profiling
          10.4 Exploiting DNA biomarkers
          10.5 The rise of companion diagnostics

EXECUTIVE SUMMARY

Unlike traditional in vitro diagnostics, whose role is largely confined to diagnosis and monitoring of a restricted range of diseases, molecular diagnostics are establishing themselves as effective tools for all aspects of disease management, especially in areas of unmet clinical need. Based on sensitive detection of disease- and often individual-specific biomarkers, they provide an opportunity to intercept the disease process early, stratify patients for treatment and/or predict treatment success. Depending on the clinical situation, DNA sequences, DNA methylation patterns, gene expression profiles, proteins, protein expression, or combinations of these, may all be used as biomarkers.

The first generation of molecular diagnostics on the market utilize established technology platforms - immunoassays and probe-based nucleic acid testing (NAT). While the world market for in vitro diagnostic products (IVDs) as a whole is forecast to increase from $36.5 billion in 2005 to $53.6 billion in 2010 (AGR of 8.0%), the molecular diagnostic segments analyzed in this Report, will significantly outperform the market, growing from $13.8 billion in 2005 to $22.7 billion in 2010 (AGR of 10.4%). Sales of nucleic acid-based tests are expected to grow much more quickly than immunoassays. Leading manufacturers of immunoassay and nucleic acid testing products include (in descending order by market share) Roche Diagnostics, Abbott Laboratories, Johnson & Johnson, Beckman Coulter, Bayer Diagnostics, Becton Dickinson, Dade Behring, and bioMerieux.

Advances in biomarker detection technologies are examined in this Report. Molecular diagnostics increasingly utilize multiplexing platforms such as DNA microarrays that perform parallel biomarker analyses in order to provide more comprehensive clinical information. During the last two years the FDA approved the first DNA microarray instrumentation system for in vitro diagnostic use (Affymetrix's GeneChip System 3000Dx), and the first highly multiplexed diagnostic microarrays: Roche's AmpliChip CYP450 test and two cystic fibrosis tests - Tm Bioscience's Tag-It and Osmetech's eSensor. Although they have yet been approved by the FDA, tests based on transcriptomic profiling have also debuted successfully on the market.

This Report offers a comprehensive coverage of clinical applications of first- and next-generation molecular diagnostics. All major clinical markets are reviewed, with particular emphasis on commercial products recently launched and those under development in the areas of infectious diseases, cardiovascular diseases and cancer. The infectious diseases field continues to see expanded use of NAT in viral load testing and genotyping, cervical-cancer (HPV) screening, bacterial detection, and screening of blood and blood products. Developments in the cardiovascular field are being driven by the need for reliable cardiovascular risk stratification and many potential individual biomarkers and panels of biomarkers are under investigation. In the area of cancer particularly rapid advances have been made in recent years in proteomic and transcriptional profiling; these approaches have began to radically alter the way cancer is diagnosed, classified and treated.

A survey was carried out for this Report to identify US patents and patent applications filed since 1 January 2000 which deal with the molecular diagnostics applications of biomarkers. The survey yielded 463 documents. Its most striking finding was the considerable R&D activity being devoted to biomarkers of CNS and inflammatory disorders. These do not currently form significant segments of the world IVD market (unless autoimmunity is included).



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